NonlinearPCM Member List

This is the complete list of members for NonlinearPCM, including all inherited members.

A_rhoNonES	FluidSolver
accumExtraForces(IonicGradient *forces, const ScalarFieldTilde &A_nCavityTilde) const	PCM	protected
Adiel	PCM	protected
applyMetric(const ScalarFieldTilde &) const	NonlinearPCM	protectedvirtual
atomicNumbers	PCM	protected
atpos (defined in FluidSolver)	FluidSolver
axpy(double alpha, const ScalarFieldTilde &X, ScalarFieldTilde &Y) const	NonlinearPCM	inlineprotectedvirtual
bulkPotential() (defined in FluidSolver)	FluidSolver	inlinevirtual
clearState()	Pulay< ScalarFieldTilde >
compute(ScalarFieldMuEps *grad, ScalarFieldMuEps *Kgrad)	NonlinearPCM	virtual
constrain(ScalarFieldMuEps &)	Minimizable< ScalarFieldMuEps >	inlinevirtual
coulomb(const ScalarFieldTilde &rho) (defined in PCM)	PCM	inlineprotectedstatic
cycle(double dEprev, std::vector< double > &extraValues)	NonlinearPCM	protectedvirtual
dot(const ScalarFieldTilde &X, const ScalarFieldTilde &Y) const	NonlinearPCM	inlineprotectedvirtual
dumpDebug(const char *filenamePattern) const	PCM	virtual
dumpDensities(const char *filenamePattern) const	NonlinearPCM	virtual
e (defined in FluidSolver)	FluidSolver
epsBulk (defined in FluidSolver)	FluidSolver
epsInf	FluidSolver
fdTest(const MinimizeParams &params)	Minimizable< ScalarFieldMuEps >
FluidSolver(const Everything &e, const FluidSolverParams &fsp)	FluidSolver
fsp (defined in FluidSolver)	FluidSolver
get_Adiel_and_grad(ScalarFieldTilde *Adiel_rhoExplicitTilde=0, ScalarFieldTilde *Adiel_nCavityTilde=0, IonicGradient *extraForces=0) const	FluidSolver
get_Adiel_and_grad_internal(ScalarFieldTilde &Adiel_rhoExplicitTilde, ScalarFieldTilde &Adiel_nCavityTilde, IonicGradient *extraForces) const	NonlinearPCM	protectedvirtual
getFullCore() const	PCM	protected
getVariable() const	NonlinearPCM	protectedvirtual
gInfo (defined in FluidSolver)	FluidSolver
ionWidthMuCorrection() const	FluidSolver
k2factor	FluidSolver
loadState(const char *filename)	NonlinearPCM	virtual
Minimizable< ScalarFieldMuEps >::minimize(const MinimizeParams &params)	Minimizable< ScalarFieldMuEps >
Pulay< ScalarFieldTilde >::minimize(double Eprev=+DBL_MAX, std::vector< string > extraNames=std::vector< string >(), std::vector< double > extraThresh=std::vector< double >())	Pulay< ScalarFieldTilde >
minimizeFluid()	NonlinearPCM	virtual
nCavity (defined in PCM)	PCM	protected
nCavityEx	PCM	protected
NonlinearPCM(const Everything &e, const FluidSolverParams &params)	NonlinearPCM
operator()(const ScalarFieldMuEps &state, ScalarFieldMuEps &Adiel_state, ScalarFieldTilde *Adiel_rhoExplicitTilde=0, ScalarFieldTilde *Adiel_nCavityTilde=0, IonicGradient *forces=0) const	NonlinearPCM
PCM(const Everything &e, const FluidSolverParams &fsp) (defined in PCM)	PCM
precondition(const ScalarFieldTilde &) const	NonlinearPCM	protectedvirtual
prefersGummel() const	NonlinearPCM	inlinevirtual
printDebug(FILE *fp) const	PCM	inlineprotectedvirtual
propagateCavityGradients(const ScalarFieldArray &A_shape, ScalarField &A_nCavity, ScalarFieldTilde &A_rhoExplicitTilde, IonicGradient *forces) const	PCM	protected
Pulay(const PulayParams &pp) (defined in Pulay< ScalarFieldTilde >)	Pulay< ScalarFieldTilde >
readVariable(ScalarFieldTilde &X, FILE *fp) const	NonlinearPCM	protectedvirtual
Minimizable< ScalarFieldMuEps >::report(int iter)	Minimizable< ScalarFieldMuEps >	inlinevirtual
Pulay< ScalarFieldTilde >::report(int iter)	Pulay< ScalarFieldTilde >	inlineprotectedvirtual
rhoExplicitTilde	PCM	protected
safeStepSize(const ScalarFieldMuEps &dir) const	Minimizable< ScalarFieldMuEps >	inlinevirtual
saveState(const char *filename) const	NonlinearPCM	virtual
set(const ScalarFieldTilde &rhoExplicitTilde, const ScalarFieldTilde &nCavityTilde)	FluidSolver
set_internal(const ScalarFieldTilde &rhoExplicitTilde, const ScalarFieldTilde &nCavityTilde)	NonlinearPCM	protectedvirtual
setVariable(const ScalarFieldTilde &)	NonlinearPCM	protectedvirtual
Sf	PCM	protected
shape	PCM	protected
shapeVdw	PCM	protected
state	NonlinearPCM
step(const ScalarFieldMuEps &dir, double alpha)	NonlinearPCM	virtual
Minimizable< ScalarFieldMuEps >::sync(double x) const	Minimizable< ScalarFieldMuEps >	inlinevirtual
Pulay< ScalarFieldTilde >::sync(double x) const	Pulay< ScalarFieldTilde >	inlinevirtual
tauCavity (defined in PCM)	PCM	protected
updateCavity()	PCM	protected
useGummel() const (defined in FluidSolver)	FluidSolver	inline
variableSize() const	NonlinearPCM	inlineprotectedvirtual
writeVariable(const ScalarFieldTilde &X, FILE *fp) const (defined in NonlinearPCM)	NonlinearPCM	protectedvirtual
~FluidSolver() (defined in FluidSolver)	FluidSolver	inlinevirtual
~NonlinearPCM() (defined in NonlinearPCM)	NonlinearPCM	virtual
~PCM() (defined in PCM)	PCM	virtual