Metadynamics on a bond between two atoms. More...
#include <Metadynamics.h>
Public Member Functions | |
| void | initialize () |
| initialize potential, including load from file if specified | |
| void | save () |
| save current bias potential to file if specified | |
| double | energyAndGrad (const GridInfo &gInfo, std::vector< Atom > &atoms) |
Public Attributes | |
| int | iSp1 |
| int | at1 |
| species-name and 0-based index of first atom | |
| int | iSp2 |
| int | at2 |
| species-name and 0-based index of second atom | |
| double | resolution |
| spatial resolution of bias potential in bohrs | |
| double | energy_per_step |
| integral of energy in Eh-a0 added to bias potential profile each time step | |
| string | state_filename |
| file name to load/save bias potential from | |
| diagMatrix | potential |
| bias potential accumulated during metadynamics (in Hartrees) | |
Metadynamics on a bond between two atoms.